@article{10.1162/artl_a_00398,
    author = {Sienkiewicz, Rafał and Jędruch, Wojciech},
    title = {DigiHive: Artificial Chemistry Environment for Modeling of
                    Self-Organization Phenomena},
    journal = {Artificial Life},
    volume = {29},
    number = {2},
    pages = {235-260},
    year = {2023},
    month = {05},
    abstract = {The article presents the DigiHive system, an artificial chemistry simulation
                    environment, and the results of preliminary simulation experiments leading
                    toward building a self-replicating system resembling a living cell. The
                    two-dimensional environment is populated by particles that can bond together and
                    form complexes of particles. Some complexes can recognize and change the
                    structures of surrounding complexes, where the functions they perform are
                    encoded in their structure in the form of Prolog-like language expressions.
                    After introducing the DigiHive environment, we present the results of
                    simulations of two fundamental parts of a self-replicating system, the work of a
                    universal constructor and a copying machine, and the growth and division of a
                    cell-like wall. At the end of the article, the limitations and arising
                    difficulties of modeling in the DigiHive environment are presented, along with a
                    discussion of possible future experiments and applications of this type of
                    modeling.},
    issn = {1064-5462},
    doi = {10.1162/artl_a_00398},
    url = {https://doi.org/10.1162/artl_a_00398},
    eprint = {https://direct.mit.edu/artl/article-pdf/29/2/235/2140460/artl_a_00398.pdf},
}



@ARTICLE{jedruchS2008Modelowanie,
 author = "Wojciech Jędruch and Rafał Sienkiewicz",
 title = "Modelowanie systemów samoreprodukujących się",
 journal = "Metody informatyki stosowanej",
 year = "2008",
 volume = "16",
 number = "3",
 pages = "135--147"
}

@INCOLLECTION{jedruchS2006Modelowanie,
 author = "Jędruch, Wojciech and Sienkiewicz, Rafał",
 title = "Modelowanie indywiduowe",
 booktitle = "Aplikacje rozproszone i systemy internetowe",
 publisher = "Gdańsk University of Technology",
 year = "2006",
 series = "Kask Book",
 pages = "241--252",
 address = "Gdańsk, Poland"
}

@INCOLLECTION{jedruchS2007Iteligencja,
 author = "Jędruch, Wojciech and Sienkiewicz, Rafał",
 title = "Inteligencja zespołowa",
 booktitle = "Inteligentne wydobywanie informacji w celach diagnostycznych",
 publisher = "PWNT ",
 year = "2007",
 editor = "Kowalczuk, Z. and Malina, W. and Wiszniewski, B.",
 volume = "2",
 series = "Automatyka i Informatyka",
 pages = "413--432",
 address = "Gdańsk, Poland"
}

@MASTERSTHESIS{knitter2006,
 author = "Szymon Knitter",
 title = "Badanie dynamiki systemów samoreprodukujących się w sztucznym środowisku",
 school = "Gdańsk University of Technology, Faculty of Electronics, Telecommunication and Informatics",
 year = "2006",
 address = "Gdańsk, Poland"
}

@INPROCEEDINGS{sienkiewiczJ2004Organization,
 author = "Sienkiewicz, Rafał and Jędruch, Wojciech",
 title = "Self-organization in Artificial Environment",
 booktitle = "Proceedings of Artificial Intelligence Studies",
 year = "2004",
 editor = "Kłopotek, M. and Tchórzewski, J.",
 volume = "3 (26)",
 address = "Siedlce, Poland",
 organization = "Institute of Computer Science University of Podlasie",
 publisher = "Publishing House of Univesity of Podlasie"
}

@INPROCEEDINGS{sienkiewicz2007Language,
 author = "Sienkiewicz, Rafał",
 title = "A New Language in Environment of Artificial Life Modeling",
 booktitle = "PD FCCS'2007: 3rd Polish and International PD Forum-Conference on Computer Science",
 year = "2007",
 editor = "Rutkowska, Danuta",
 address = "Łódź, Poland",
 note = "(in Polish, available on-line at: \url{http://www.fccs.wshe.lodz.pl/fccs2007/artykuly/sienkiewicz.pdf})"
}

@INPROCEEDINGS{sienkiewiczJ2009Constructor,
 author = "Rafał Sienkiewicz and Wojciech Jędruch",
 title = "The universal constructor in the DigiHive environment",
 booktitle =  "Advances in Artificial Life, 10th European Conference on Artificial Life, 
	ECAL 2009, Budapest, Hungary, September 13-16, 2009",
 year = "2009",
 series = "Lecture Notes in Computer Science",
 note = "(in press)"
}

@MISC{digihiveWebsite,
 author = "Sienkiewicz, Rafał",
 title = "The DigiHive website",
 howpublished = "\url{http://www.digihive.pl/}"
}


@TECHREPORT{sienkiewicz2006Report,
 author = "Sienkiewicz, Rafał and Jędruch, Wojciech",
 title = "The universe for individual based modelling",
 institution = "Gdańsk University of Technology",
 year = "2006",
 number = "11/2006/ETI",
 address = "Gdańsk, Poland"
}

@inproceedings{sienkiewicz2009Experiments,
  author    = {Rafał Sienkiewicz},
  title     = {Experiments with the Universal Constructor in the DigiHive
               Environment},
  editor    = {Kevin B. Korb and
               Marcus Randall and
               Tim Hendtlass},
  booktitle = {Artificial Life: Borrowing from Biology, 4th Australian
               Conference, ACAL 2009, Melbourne, Australia, December 1-4,
               2009},
  publisher = {Springer},
  series    = {Lecture Notes in Artificial Intelligence},
  volume    = {5865},
  year      = {2009},
  pages     = {106-115} 
}

@INPROCEEDINGS{sienkiewicz2007Environment,
 author = "Sienkiewicz, Rafał and Jędruch, Wojciech",
 title = "Artificial Environment for Simulation of Emergent Behaviour",
 booktitle = "Adaptive and Natural Computing Algorithms: 8th International Conference, ICANNGA 2007, Warsaw, Poland, April 11-14, 2007, Proceedings, Part I",
 year = "2007",
 editor = "Bieliczyński et al, B.",
 publisher = {Springer},
 volume = "4431/2007",
 series = "LNCS",
 pages = "386--393",
 publisher = "Springer"
}

@PHDTHESIS{sienkiewicz2010Thesis,
	author="Rafał Sienkiewicz",
	title="The particle methods for simulation of emergent phenomena",
	school = "Gdańsk University of Technology, Faculty of Electronics, Telecommunication and Informatics",
	year = "2010",
   address = "Gdańsk, Poland"	
}